PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9504_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 369aa    MW: 41529.5 Da    PI: 5.0026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9504_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12164215155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  RrC9504_p1 164 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 215
                 79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.36E-12162219No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13162218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16163228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428163214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9169220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00661298360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MIDYMFNRNL QQQKQSMPQQ HQLSPSGFGA TPAFDKMSFA DVMQFADFGP KLALNQTGNQ  60
DNQETGMDPV YFLKFPVLND KIEDHNQTHN LMSQEGGECE GNIGNVFLEE KENQDVENDN  120
NSVQLRFIGG EEEERENKND TTKEVKSKRK RARTSKTSEE VESQRMTHIA VERNRRKQMN  180
EHLRVLRSLM PGSYVQRGDQ ASIIGGAIEF VRELEQLLQC LESQKRRRIL GDTGNRQIGD  240
MTTTMTSSSP ITSVVNPLTS TGNVTELEGG GGGLQEETAE NKSCLADVEV KLLGFDAMIK  300
ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NITSETRFTA EDIASSIQEI  360
FSFIHANTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164175RMTHIAVERNRR
2224228KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936313e-99AB493631.1 Arabidopsis thaliana At3g24140 mRNA for hypothetical protein, partial cds, clone: RAAt3g24140.
GenBankAF4886243e-99AF488624.1 Arabidopsis thaliana clone bHLH097 putative bHLH transcription factor mRNA, partial sequence.
GenBankAK2213243e-99AK221324.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL25-14-O10.
GenBankBT0289613e-99BT028961.1 Arabidopsis thaliana At3g24140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135876.10.0PREDICTED: transcription factor FAMA isoform X2
RefseqXP_013685447.10.0PREDICTED: transcription factor FAMA isoform X2
SwissprotQ56YJ80.0FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A078DUK80.0A0A078DUK8_BRANA; BnaA03g37180D protein
STRINGBra001929.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55482649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-176bHLH family protein